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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_13165244_13192170_F

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
13165244 - 13192170
Intron Length:
26927

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAAGAAAA
5'SS Class:
strong_major
3'SS Sequence:
TCCTGTCTTACAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TCTTGAT
U12 Branch Point Sequence:
TTGCTCTTGATG
Flanking Amino Acid:
KQPLIRMPRQRFILDSTSKR
Intron Amino Acid Position:
395

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
92.9
1.01
0.7
86
23.7
Major BPS
83.8
0.84
1
73.6
41.8
Major PPT
81.9
0.72
0.8
75.5
33.1
Minor 5ss
32.8
-2
2.9
39.7
45.8
Minor BPS
61.3
0.21
1.3
63.08
39.5

Associated Gene:

Gene:
BRINP3
Ensembl Gene ID:
ENSAPLG00000014479
Chromosome:
8

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000015094
13019773 - 13200596
180824