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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_13165244_13199251_F

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
13165244 - 13199251
Intron Length:
34008

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAAGAAAA
5'SS Class:
strong_major
3'SS Sequence:
TTTAATGTTGCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTAAT
U12 Branch Point Sequence:
ATTATTTTAATG
Flanking Amino Acid:
KQPLIRMPRQRSSNYWLNRI
Intron Amino Acid Position:
363

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
92.9
1.01
0.7
86
23.7
Major BPS
99.5
1.23
0.5
98.2
4.2
Major PPT
79.5
0.66
1
73.3
41.5
Minor 5ss
32.8
-2
2.9
39.7
45.8
Minor BPS
64.8
0.33
1.3
65.7
36.6

Associated Gene:

Gene:
BRINP3
Ensembl Gene ID:
ENSAPLG00000014479
Chromosome:
8

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000033303
13005054 - 13200368
195315
ENSAPLT00000025610
13005054 - 13200368
195315
ENSAPLT00000037871
13005054 - 13200368
195315