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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_13192210_13199251_F

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
13192210 - 13199251
Intron Length:
7042

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAG|GTAATGCGT
5'SS Class:
major
3'SS Sequence:
TTTAATGTTGCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTAAT
U12 Branch Point Sequence:
ATTATTTTAATG
Flanking Amino Acid:
LDSTSKRGKNRSSNYWLNRI
Intron Amino Acid Position:
408

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
77.9
0.66
1
66.2
44.9
Major BPS
99.5
1.23
0.5
98.2
4.2
Major PPT
79.5
0.66
1
73.3
41.5
Minor 5ss
32.5
-2
3.4
48.2
47.3
Minor BPS
64.8
0.33
1.3
65.7
36.6

Associated Gene:

Gene:
BRINP3
Ensembl Gene ID:
ENSAPLG00000014479
Chromosome:
8

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000015094
13019773 - 13200596
180824