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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_1320231_1322170_F

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
1320231 - 1322170
Intron Length:
1940

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ACG|GTGAGCTAT
5'SS Class:
major
3'SS Sequence:
TCTCTTTTTGCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TAATTAT
U12 Branch Point Sequence:
GTCTAATTATTT
Flanking Amino Acid:
DLGPQIGWTTVFLIEYTGPL
Intron Amino Acid Position:
103

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
77.7
0.65
1
71.4
36.8
Major BPS
76.9
0.67
1
66.3
40.4
Major PPT
91.6
0.94
0.6
87.6
22.6
Minor 5ss
40.6
-1.1
3.1
56.2
48
Minor BPS
47.3
-0.1
2
66.9
43.7

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000007564
Chromosome:
8

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000007886
1316304 - 1330178
13875