About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_1322287_1322404_F

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
1322287 - 1322404
Intron Length:
118

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAA|GTAAGTCCG
5'SS Class:
strong_major
3'SS Sequence:
TTGCTGTTTCTAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTTAA
U12 Branch Point Sequence:
GCACTCTTAAAT
Flanking Amino Acid:
RFTSSPHPVVNLACICHSFH
Intron Amino Acid Position:
141

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.7
0.77
1
69.1
41.8
Major BPS
87.3
0.93
0.8
78
36.5
Major PPT
77.1
0.61
0.9
69.4
41.7
Minor 5ss
36.2
-1.6
2.9
43.1
37.6
Minor BPS
59.3
0.37
1.4
68.29
41.9

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000007564
Chromosome:
8

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000007886
1316304 - 1330178
13875