Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_1326588_1326675_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

1326588 - 1326675

Intron Length:

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CTT|GTAAGTAGC

5'SS Class:

major

3'SS Sequence:

TTTTGTTTTGTAG|C

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

TAAACAT

U12 Branch Point Sequence:

TTAGTGCTAACC

Flanking Amino Acid:

YINHPLYTPPSYGKKQINFA

Intron Amino Acid Position:

201

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

0.61

1.1

70.9

39.2

Major BPS

63.2

0.33

1.1

69.6

35.7

Major PPT

88.5

0.87

0.7

84.9

29.9

Minor 5ss

38.7

-1.3

2.8

51.8

39.1

Minor BPS

45.8

-0.3

2.3

63.21

42.3

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000007564

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000007886

1316304 - 1330178

13875