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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_13287692_13288751_R

Intron Information:

Intron Rank:
130204
Intron Class:
major-like
Intron Phase:
Intron Coordinates:
13287692 - 13288751
Intron Length:
1060

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAACCTTA
5'SS Class:
weak_major
3'SS Sequence:
TATTGAATTACAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATTTTAT
U12 Branch Point Sequence:
TTTTATTGAATT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
77.9
0.66
1.2
75
38.1
Major BPS
87.7
0.94
0.8
77.7
36.7
Major PPT
74.8
0.56
1
66.8
42.7
Minor 5ss
60.4
0.35
2.4
73.5
43.2
Minor BPS
67
0.61
1.6
85.83
34

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000017256
Chromosome:
8

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000042925
13287370 - 13289583
2214