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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_1328873_1329903_F

Intron Information:

Intron Rank:
11
Intron Class:
major-like
Intron Phase:
0
Intron Coordinates:
1328873 - 1329903
Intron Length:
1031

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTATGTATT
5'SS Class:
strong_major
3'SS Sequence:
TTGGCCAAAACAG|G
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
TTTTAAA
U12 Branch Point Sequence:
ATGTTTTAAATT
Flanking Amino Acid:
FVSCPNYTYEVGTWISFTVM
Intron Amino Acid Position:
265

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
91.9
0.99
0.8
92.6
23.2
Major BPS
90.4
1
0.7
90.2
19.3
Major PPT
58.3
0.19
1.1
52.5
40.7
Minor 5ss
47.8
-0.2
2.5
68.3
42.6
Minor BPS
58.3
0.34
1.6
72.92
39.2

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000007564
Chromosome:
8

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000007886
1316304 - 1330178
13875