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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_1329950_1330050_F

Intron Information:

Intron Rank:
12
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
1329950 - 1330050
Intron Length:
101

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGAGTAAA
5'SS Class:
strong_major
3'SS Sequence:
TTCTTCCTTCCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTATGAA
U12 Branch Point Sequence:
TAGTTATGAAGC
Flanking Amino Acid:
SFTVMTQCVPVGLFTLLCFI
Intron Amino Acid Position:
280

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
93.6
1.03
0.7
88.4
18.8
Major BPS
75.5
0.63
1
66
40.9
Major PPT
88.7
0.87
0.7
81
31
Minor 5ss
29.6
-2.3
2.6
32.7
42.2
Minor BPS
46.2
-0.3
1.9
57.24
41.1

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000007564
Chromosome:
8

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000007886
1316304 - 1330178
13875