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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_13328660_13331170_F

Intron Information:

Intron Rank:
133941
Intron Class:
major
Intron Phase:
Intron Coordinates:
13328660 - 13331170
Intron Length:
2511

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGGGAAAA
5'SS Class:
major
3'SS Sequence:
GTTTTGCTGATAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TAATAAT
U12 Branch Point Sequence:
TAGTCTGTAATC
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.7
0.68
1
73
33.3
Major BPS
80
0.75
1
78.6
31
Major PPT
69.4
0.44
1
65.5
41.2
Minor 5ss
25.9
-2.8
3
30.2
43.1
Minor BPS
55.8
0.16
2
66.82
39.6

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000022019
Chromosome:
8

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000017796
13325295 - 13332189
6895