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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_1333370_1333711_R

Intron Information:

Intron Rank:
39
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
1333370 - 1333711
Intron Length:
342

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAA|GTAAGTTGA
5'SS Class:
strong_major
3'SS Sequence:
ATGTGCTTCCCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATCTAAT
U12 Branch Point Sequence:
AATTCCCAAACC
Flanking Amino Acid:
CLGTIQQLKYKFGDGYIVTL
Intron Amino Acid Position:
1816

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.3
0.83
0.9
77.8
33.2
Major BPS
85.7
0.89
0.8
84
22.2
Major PPT
71.5
0.48
1
62.1
43.8
Minor 5ss
41.3
-1
2.8
49.5
41.2
Minor BPS
56.3
0.18
2
71.08
39.7

Associated Gene:

Gene:
ABCA4
Ensembl Gene ID:
ENSAPLG00000007981
Chromosome:
8

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000021728
1332433 - 1381846
49414
ENSAPLT00000018229
1332433 - 1381846
49414
ENSAPLT00000008436
1332433 - 1381846
49414