Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_1336115_1337059_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

1336115 - 1337059

Intron Length:

945

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

TAG|GTAAGTACC

5'SS Class:

strong_major

3'SS Sequence:

TTTGTTTCTCCAG|T

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

ATAAGAC

U12 Branch Point Sequence:

AGGTATAAGACT

Flanking Amino Acid:

TSGDAVVAGNSILTDISSVH

Intron Amino Acid Position:

1658

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

96.6

1.1

0.7

87.9

25.6

Major BPS

49.5

-0

1.1

46.8

36.1

Major PPT

88.6

0.87

0.7

81.3

36.4

Minor 5ss

-1.5

2.6

46.5

41.8

Minor BPS

40.9

-0.6

1.9

55.67

40.4

Associated Gene:

Gene:

ABCA4

Ensembl Gene ID:

ENSAPLG00000007981

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000008436

1332433 - 1381846

49414

ENSAPLT00000021728

1332433 - 1381846

49414

ENSAPLT00000018229

1332433 - 1381846

49414