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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_1339310_1340059_R

Intron Information:

Intron Rank:
31
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
1339310 - 1340059
Intron Length:
750

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TTG|GTAAGTGAG
5'SS Class:
strong_major
3'SS Sequence:
TCCCCTTCCATAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATTTAAT
U12 Branch Point Sequence:
TGTATTTAATCT
Flanking Amino Acid:
QAVSEVYARFGEEHVSNPFQ
Intron Amino Acid Position:
1518

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87
0.87
0.9
74.1
36.5
Major BPS
90.7
1.01
0.7
90
19.9
Major PPT
72.6
0.51
0.7
67.9
25.7
Minor 5ss
32.2
-2
3.1
37
41.8
Minor BPS
47.7
-0
1.9
68.51
42.7

Associated Gene:

Gene:
ABCA4
Ensembl Gene ID:
ENSAPLG00000007981
Chromosome:
8

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000008436
1332433 - 1381846
49414
ENSAPLT00000021728
1332433 - 1381846
49414
ENSAPLT00000018229
1332433 - 1381846
49414