Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_1341256_1342172_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

1341256 - 1342172

Intron Length:

917

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

TGG|GTGAGTGTT

5'SS Class:

strong_major

3'SS Sequence:

CTTTTGCATGCAG|A

3'SS Class:

major_PPT

U2 Branch Point Sequence:

CTTTAAT

U12 Branch Point Sequence:

TTTAATTTATAT

Flanking Amino Acid:

PVLVALLLLYGWAVIPMMYP

Intron Amino Acid Position:

1427

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

84.5

0.81

0.9

81.3

32.8

Major BPS

87.2

0.92

0.9

87.6

25.6

Major PPT

79.1

0.65

0.9

73.7

35.9

Minor 5ss

32.7

-2

3.4

40.8

45.4

Minor BPS

50.3

0.09

1.9

75.11

41.2

Associated Gene:

Gene:

ABCA4

Ensembl Gene ID:

ENSAPLG00000007981

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000021728

1332433 - 1381846

49414

ENSAPLT00000018229

1332433 - 1381846

49414

ENSAPLT00000008436

1332433 - 1381846

49414