Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_1342289_1343750_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

1342289 - 1343750

Intron Length:

1462

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

ATA|GTGAGTAAC

5'SS Class:

major

3'SS Sequence:

TGTGATGTGGCAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TCTTTAC

U12 Branch Point Sequence:

TGATCTTTACCC

Flanking Amino Acid:

YWLTNFMWDIVNYAVSAGLV

Intron Amino Acid Position:

1389

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

0.59

31.2

Major BPS

0.6

65.6

41.1

Major PPT

63.1

0.29

1.2

57.8

47.1

Minor 5ss

32.4

-2

2.7

38.3

34.3

Minor BPS

65.1

0.45

1.6

71.84

39.3

Associated Gene:

Gene:

ABCA4

Ensembl Gene ID:

ENSAPLG00000007981

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000021728

1332433 - 1381846

49414

ENSAPLT00000018229

1332433 - 1381846

49414

ENSAPLT00000008436

1332433 - 1381846

49414