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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_13424985_13425752_F

Intron Information:

Intron Rank:
137315
Intron Class:
major
Intron Phase:
Intron Coordinates:
13424985 - 13425752
Intron Length:
768

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTTAGTCTT
5'SS Class:
strong_major
3'SS Sequence:
TTTGCACTTTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AATTAAT
U12 Branch Point Sequence:
GAAAAATTAATC
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.9
0.82
1.1
83
36.1
Major BPS
83
0.82
0.8
82
24.9
Major PPT
81.9
0.72
0.8
78.3
35.2
Minor 5ss
36.5
-1.5
3
50.8
45.5
Minor BPS
46.7
-0.2
1.7
53.03
37.3

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000023950
Chromosome:
8

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000046503
13415966 - 13425830
9865