Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_1343929_1344937_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

1343929 - 1344937

Intron Length:

1009

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

TGT|GTAAGTCTT

5'SS Class:

major

3'SS Sequence:

TGCTTTGTTGCAG|G

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

CATCCAT

U12 Branch Point Sequence:

CCTTGCTCAGTC

Flanking Amino Acid:

LTKEQLSEVTVLTTSVDALV

Intron Amino Acid Position:

1329

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

75.6

0.6

1.1

74.7

41.5

Major BPS

57.2

0.18

1.3

68.1

Major PPT

81.5

0.71

0.9

76.2

37.8

Minor 5ss

42.1

-0.9

3.1

60.2

44.1

Minor BPS

44.3

-0.4

2.1

53.86

44.7

Associated Gene:

Gene:

ABCA4

Ensembl Gene ID:

ENSAPLG00000007981

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000018229

1332433 - 1381846

49414

ENSAPLT00000008436

1332433 - 1381846

49414

ENSAPLT00000021728

1332433 - 1381846

49414