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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_1345108_1345569_R

Intron Information:

Intron Rank:
26
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
1345108 - 1345569
Intron Length:
462

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTATTTGCT
5'SS Class:
major
3'SS Sequence:
CTGACTCTTTTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTTAA
U12 Branch Point Sequence:
GCTTCTTAAACG
Flanking Amino Acid:
KYMETEDNIKVWFNNKGWHA
Intron Amino Acid Position:
1273

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.1
0.66
1
73.4
35.4
Major BPS
82.2
0.8
0.8
71.9
35.8
Major PPT
72.8
0.51
0.9
69.8
36.5
Minor 5ss
41.5
-0.9
3.1
59.5
45
Minor BPS
60.3
0.19
1.8
63.47
44.7

Associated Gene:

Gene:
ABCA4
Ensembl Gene ID:
ENSAPLG00000007981
Chromosome:
8

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000021728
1332433 - 1381846
49414
ENSAPLT00000018229
1332433 - 1381846
49414
ENSAPLT00000008436
1332433 - 1381846
49414