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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_1355035_1355802_R

Intron Information:

Intron Rank:
15
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
1355035 - 1355802
Intron Length:
768

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GCA|GTAAGTGTG
5'SS Class:
major
3'SS Sequence:
TTCTCCATGCCAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CTTTCAT
U12 Branch Point Sequence:
TCATCTTTTATC
Flanking Amino Acid:
MKNTRIARNASFCSCGSQCS
Intron Amino Acid Position:
836

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
76.5
0.62
1
70.3
40.5
Major BPS
87.6
0.93
0.9
89.3
26
Major PPT
72.6
0.51
1
66.3
39.5
Minor 5ss
38.5
-1.3
3.3
54.8
43.4
Minor BPS
60.3
0.3
1.6
66.59
39.6

Associated Gene:

Gene:
ABCA4
Ensembl Gene ID:
ENSAPLG00000007981
Chromosome:
8

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000021728
1332433 - 1381846
49414
ENSAPLT00000018229
1332433 - 1381846
49414
ENSAPLT00000008436
1332433 - 1381846
49414