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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_1357755_1358484_R

Intron Information:

Intron Rank:
12
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
1357755 - 1358484
Intron Length:
730

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TCA|GTAAGTATT
5'SS Class:
strong_major
3'SS Sequence:
TCTGATTTCACAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTAAAT
U12 Branch Point Sequence:
ATTGCCTTAATG
Flanking Amino Acid:
MCPQYNILFNHLTVAEHILF
Intron Amino Acid Position:
680

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.5
0.72
1
85
32.3
Major BPS
82.3
0.8
0.9
87.6
25.7
Major PPT
77.9
0.63
0.9
71.7
37.9
Minor 5ss
43.9
-0.7
2.9
66.1
38.6
Minor BPS
74
0.61
1.4
73.58
39.3

Associated Gene:

Gene:
ABCA4
Ensembl Gene ID:
ENSAPLG00000007981
Chromosome:
8

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000008436
1332433 - 1381846
49414
ENSAPLT00000021728
1332433 - 1381846
49414
ENSAPLT00000018229
1332433 - 1381846
49414