About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_13579508_13579960_R

Intron Information:

Intron Rank:
131463
Intron Class:
major
Intron Phase:
Intron Coordinates:
13579508 - 13579960
Intron Length:
453

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTATGTCAT
5'SS Class:
strong_major
3'SS Sequence:
GCTTATATTACAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTAAA
U12 Branch Point Sequence:
CATTGCTTATAT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
88
0.89
0.9
79.7
35.4
Major BPS
90.4
1
0.7
90.2
19.3
Major PPT
76.7
0.6
0.9
69.3
40.3
Minor 5ss
42
-0.9
2.9
58.1
46.5
Minor BPS
49.3
0.03
2.1
70.25
46.2

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000017937
Chromosome:
8

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000027818
13579476 - 13582099
2624