Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_13615371_13624031_R

Intron Information:

Intron Rank:

151902

Intron Class:

major

Intron Phase:

Intron Coordinates:

13615371 - 13624031

Intron Length:

8661

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CTG|GTATATACA

5'SS Class:

major

3'SS Sequence:

TTTTTTTTTTTAG|G

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

ATTTAAA

U12 Branch Point Sequence:

AAATATTTAAAG

Flanking Amino Acid:

Intron Amino Acid Position:

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

71.7

0.51

68.4

35.9

Major BPS

81.6

0.78

0.8

24.9

Major PPT

95.8

1.03

0.5

96.6

11.7

Minor 5ss

41.6

-0.9

2.6

48.9

42.2

Minor BPS

51.2

-0.1

1.6

54.6

39.7

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000029286

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000027342

13615337 - 13627436

12100