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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_1362953_1366957_R

Intron Information:

Intron Rank:
9
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
1362953 - 1366957
Intron Length:
4005

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTGAGTTCT
5'SS Class:
strong_major
3'SS Sequence:
TTTTTTTATATAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTTAT
U12 Branch Point Sequence:
TTTTGTTTGACT
Flanking Amino Acid:
PKAEKTATVDENSPQSECCV
Intron Amino Acid Position:
502

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.1
0.83
0.8
79.3
29.7
Major BPS
96.5
1.15
0.6
86
34.2
Major PPT
87.5
0.84
0.7
84.9
28.8
Minor 5ss
37.5
-1.4
2.9
47.5
42.3
Minor BPS
72
0.77
1.7
90.81
33.2

Associated Gene:

Gene:
ABCA4
Ensembl Gene ID:
ENSAPLG00000007981
Chromosome:
8

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000021728
1332433 - 1381846
49414
ENSAPLT00000018229
1332433 - 1381846
49414
ENSAPLT00000008436
1332433 - 1381846
49414