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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_13660288_13665307_R

Intron Information:

Intron Rank:
151905
Intron Class:
major
Intron Phase:
Intron Coordinates:
13660288 - 13665307
Intron Length:
5020

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAT|GTGAGTCCC
5'SS Class:
major
3'SS Sequence:
ATCATTTTCACAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTAAT
U12 Branch Point Sequence:
TTTTTCTGATCA
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
77.6
0.65
1
67.9
37.3
Major BPS
94.5
1.11
0.6
92.2
14.6
Major PPT
77.8
0.63
0.9
72
37.3
Minor 5ss
32.5
-2
2.9
41.7
37.6
Minor BPS
65.4
0.48
1.7
79.93
36

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000029286
Chromosome:
8

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000035337
13659400 - 13665857
6458
ENSAPLT00000032928
13623597 - 13669187
45591
ENSAPLT00000030268
13658307 - 13669187
10881