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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_136750_182607_F

Intron Information:

Intron Rank:
133386
Intron Class:
major
Intron Phase:
Intron Coordinates:
136750 - 182607
Intron Length:
45858

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AGA|GTGAGTAAG
5'SS Class:
major
3'SS Sequence:
TTTTCCTTCTTAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTTAT
U12 Branch Point Sequence:
TTATTTTTATTT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
72.2
0.52
1
67.7
39.3
Major BPS
96.5
1.15
0.6
86
34.2
Major PPT
85.4
0.8
0.6
85.2
22.2
Minor 5ss
30.9
-2.2
2.6
29.9
36.5
Minor BPS
64.7
0.54
1.5
79.8
36.8

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000021733
Chromosome:
8

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000045216
135411 - 182718
47308