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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_1369192_1370385_R

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
1369192 - 1370385
Intron Length:
1194

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GCA|GTAAGCCTT
5'SS Class:
major
3'SS Sequence:
TTCTTTATTCCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TCTTTAT
U12 Branch Point Sequence:
TTTTCTTTATTC
Flanking Amino Acid:
RMTVNLKILASLLSQVAFGF
Intron Amino Acid Position:
401

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
71
0.49
1.1
66.8
44.5
Major BPS
83.9
0.84
1
73.9
41.3
Major PPT
88.4
0.86
0.7
81.4
35
Minor 5ss
46
-0.4
3.2
71.2
39.5
Minor BPS
73.1
0.7
1.5
81.83
32.8

Associated Gene:

Gene:
ABCA4
Ensembl Gene ID:
ENSAPLG00000007981
Chromosome:
8

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000021728
1332433 - 1381846
49414
ENSAPLT00000018229
1332433 - 1381846
49414
ENSAPLT00000008436
1332433 - 1381846
49414