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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_1370608_1372393_R

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
1370608 - 1372393
Intron Length:
1786

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTAAGAATG
5'SS Class:
strong_major
3'SS Sequence:
CTTTTGCCTACAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCTAAT
U12 Branch Point Sequence:
GTACTTCTAATT
Flanking Amino Acid:
STFLLTALIMCGQVLHYSSP
Intron Amino Acid Position:
327

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.7
0.82
0.9
77.2
37.6
Major BPS
94.5
1.11
0.6
92.2
14.6
Major PPT
83.1
0.75
0.8
76.6
32.2
Minor 5ss
37.2
-1.4
3
46.5
42.8
Minor BPS
50
0.08
1.6
67.4
37.3

Associated Gene:

Gene:
ABCA4
Ensembl Gene ID:
ENSAPLG00000007981
Chromosome:
8

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000018229
1332433 - 1381846
49414
ENSAPLT00000008436
1332433 - 1381846
49414
ENSAPLT00000021728
1332433 - 1381846
49414