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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_1375963_1379510_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
1375963 - 1379510
Intron Length:
3548

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAAGGTCA
5'SS Class:
strong_major
3'SS Sequence:
TGATTATTTGTAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TGATTAT
U12 Branch Point Sequence:
CTCTTCGTGATT
Flanking Amino Acid:
ALRLLSQYLECLMLDKFEGY
Intron Amino Acid Position:
125

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
90
0.94
0.8
78.4
31.8
Major BPS
69.6
0.49
1.2
60.1
46.3
Major PPT
75.8
0.58
0.9
70.6
39.9
Minor 5ss
37
-1.5
3.2
47.9
47.8
Minor BPS
49.6
0.05
2
69.43
42.7

Associated Gene:

Gene:
ABCA4
Ensembl Gene ID:
ENSAPLG00000007981
Chromosome:
8

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000008436
1332433 - 1381846
49414
ENSAPLT00000021728
1332433 - 1381846
49414
ENSAPLT00000018229
1332433 - 1381846
49414