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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_1379709_1380478_R

Intron Information:

Intron Rank:
2
Intron Class:
major-like
Intron Phase:
0
Intron Coordinates:
1379709 - 1380478
Intron Length:
770

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CGT|GTATGTTAT
5'SS Class:
weak_major
3'SS Sequence:
TGTATTTCCACAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTGAT
U12 Branch Point Sequence:
TTGTAGTGAAGC
Flanking Amino Acid:
QNSLQMNMIRDSLKHPTVRD
Intron Amino Acid Position:
59

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
68.3
0.43
1.1
69.6
37.2
Major BPS
91.3
1.03
0.7
79.6
35.6
Major PPT
78.3
0.64
0.9
72.6
37.6
Minor 5ss
49.9
-0
2.5
67
44.2
Minor BPS
43.3
-0.5
2.4
59.99
44.9

Associated Gene:

Gene:
ABCA4
Ensembl Gene ID:
ENSAPLG00000007981
Chromosome:
8

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000021728
1332433 - 1381846
49414
ENSAPLT00000018229
1332433 - 1381846
49414
ENSAPLT00000008436
1332433 - 1381846
49414