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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_14031546_14033839_F

Intron Information:

Intron Rank:
125463
Intron Class:
major
Intron Phase:
Intron Coordinates:
14031546 - 14033839
Intron Length:
2294

Sequence Information:

Terminal Dinucleotides:
GC-AG
5'SS Sequence:
TTG|GCAAGTATT
5'SS Class:
strong_major
3'SS Sequence:
TTTCCCCTATCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TATTTAC
U12 Branch Point Sequence:
TTTCCCCTATCA
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87.1
0.88
1
92.3
24.3
Major BPS
78.8
0.71
0.9
69.7
37.1
Major PPT
79.6
0.67
0.8
78.7
28.5
Minor 5ss
31.5
-2.1
4
48.3
41.8
Minor BPS
59.8
0.3
2
78.04
38.2

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000017609
Chromosome:
8

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000022850
14030717 - 14034048
3332