About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_14033896_14034005_F

Intron Information:

Intron Rank:
125464
Intron Class:
major
Intron Phase:
Intron Coordinates:
14033896 - 14034005
Intron Length:
110

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTATGAAAA
5'SS Class:
strong_major
3'SS Sequence:
GCTTTCTCTCTAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTAAAA
U12 Branch Point Sequence:
TTCTCTTTAAAA
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.8
0.82
0.9
78.7
29.9
Major BPS
73.1
0.58
1
79.6
29.1
Major PPT
78
0.63
0.8
70
36.5
Minor 5ss
38.9
-1.3
2.8
48.3
47.4
Minor BPS
75.8
0.81
1.3
80.33
35.6

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000017609
Chromosome:
8

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000022850
14030717 - 14034048
3332