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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_14077422_14079457_R

Intron Information:

Intron Rank:
137698
Intron Class:
major
Intron Phase:
Intron Coordinates:
14077422 - 14079457
Intron Length:
2036

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGATTGTC
5'SS Class:
strong_major
3'SS Sequence:
GTCCTCATCACAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TCCTCAT
U12 Branch Point Sequence:
TTGTCCTCATCA
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.4
0.76
0.9
77.6
30.5
Major BPS
82.3
0.8
0.9
81.8
30.8
Major PPT
71.8
0.49
0.9
65
35
Minor 5ss
31.9
-2.1
3.3
43.5
44.2
Minor BPS
62.7
0.4
1.8
75.72
41.7

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000021586
Chromosome:
8

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000027899
14074869 - 14095638
20770