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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_1414886_1415391_R

Intron Information:

Intron Rank:
23
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
1414886 - 1415391
Intron Length:
506

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTTTGCCTA
5'SS Class:
major
3'SS Sequence:
TATGTGTTTCCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TATTTAT
U12 Branch Point Sequence:
TCTTGCTGACTT
Flanking Amino Acid:
LDIISAPKETGDAVSPASEK
Intron Amino Acid Position:
1067

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
69
0.45
1.2
62.7
43.2
Major BPS
88.7
0.96
0.8
78
36.5
Major PPT
78.9
0.65
1
69.5
45.7
Minor 5ss
43.9
-0.7
2.8
56.9
47.3
Minor BPS
48.9
-0
2.1
72.16
45.3

Associated Gene:

Gene:
ARHGAP29
Ensembl Gene ID:
ENSAPLG00000008546
Chromosome:
8

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000008930
1413595 - 1469447
55853