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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_1415970_1416130_R

Intron Information:

Intron Rank:
21
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
1415970 - 1416130
Intron Length:
161

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAA|GTGAGTGAA
5'SS Class:
strong_major
3'SS Sequence:
CTTACGTTAACAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTCAT
U12 Branch Point Sequence:
TTTACTTTCACT
Flanking Amino Acid:
QRKSFVAVKEGILIAPSENR
Intron Amino Acid Position:
993

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.8
0.75
0.9
76.5
26.8
Major BPS
94.9
1.12
0.6
93.9
14.7
Major PPT
71
0.47
1
65.3
39.9
Minor 5ss
28.3
-2.5
3.1
31.2
36.7
Minor BPS
69.6
0.7
1.8
88.46
36.7

Associated Gene:

Gene:
ARHGAP29
Ensembl Gene ID:
ENSAPLG00000008546
Chromosome:
8

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000008930
1413595 - 1469447
55853