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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_1417381_1418814_R

Intron Information:

Intron Rank:
19
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
1417381 - 1418814
Intron Length:
1434

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTATGCACT
5'SS Class:
strong_major
3'SS Sequence:
CTTATTTATTCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TATTTAT
U12 Branch Point Sequence:
AGTTTCTGAAAT
Flanking Amino Acid:
SNVLKLYLRQLPEPLILFRL
Intron Amino Acid Position:
813

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.2
0.78
0.9
77.1
37.8
Major BPS
88.7
0.96
0.8
78
36.5
Major PPT
82.6
0.73
0.9
81.2
35.4
Minor 5ss
48.1
-0.2
2.5
67.2
43.7
Minor BPS
62.7
0.48
1.5
77.54
38

Associated Gene:

Gene:
ARHGAP29
Ensembl Gene ID:
ENSAPLG00000008546
Chromosome:
8

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000008930
1413595 - 1469447
55853