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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_1418953_1419114_R

Intron Information:

Intron Rank:
18
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
1418953 - 1419114
Intron Length:
162

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTATGCCTA
5'SS Class:
strong_major
3'SS Sequence:
TTTTTTTTTTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCAAAT
U12 Branch Point Sequence:
GTTGTGCTACTC
Flanking Amino Acid:
EIESRALNVKGIYRVNGAKS
Intron Amino Acid Position:
767

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.4
0.74
1
70.6
41.3
Major BPS
77.3
0.68
1
81.5
27
Major PPT
100
1.12
0.4
100
0
Minor 5ss
47.5
-0.2
2.8
64.7
46.6
Minor BPS
38
-0.9
2.3
50.52
40.9

Associated Gene:

Gene:
ARHGAP29
Ensembl Gene ID:
ENSAPLG00000008546
Chromosome:
8

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000008930
1413595 - 1469447
55853