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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_1419680_1420837_R

Intron Information:

Intron Rank:
16
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
1419680 - 1420837
Intron Length:
1158

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GTG|GTAATGTTG
5'SS Class:
major
3'SS Sequence:
AAAATCTCTCCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATTACAA
U12 Branch Point Sequence:
ATTACAATGACT
Flanking Amino Acid:
EREPPSPSDCGLNDLTSETA
Intron Amino Acid Position:
649

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
72.3
0.53
1.1
65
41.3
Major BPS
64.7
0.37
1
73
31.5
Major PPT
66.7
0.38
1
55.8
44.5
Minor 5ss
40.6
-1.1
3.3
52.4
45.8
Minor BPS
51.6
0.13
2
77.15
38.5

Associated Gene:

Gene:
ARHGAP29
Ensembl Gene ID:
ENSAPLG00000008546
Chromosome:
8

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000008930
1413595 - 1469447
55853