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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_1420937_1421062_R

Intron Information:

Intron Rank:
15
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
1420937 - 1421062
Intron Length:
126

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTATAATTA
5'SS Class:
major
3'SS Sequence:
GGTCATCTTCCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TCCTGAT
U12 Branch Point Sequence:
GCTTCCTGATTT
Flanking Amino Acid:
RSMDSPSASPGDFKRRLPRT
Intron Amino Acid Position:
616

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
75.8
0.61
1
72.8
32.3
Major BPS
78.8
0.71
1
67.6
40.6
Major PPT
72.8
0.51
1
62
44.1
Minor 5ss
47
-0.3
2.9
64.6
46.8
Minor BPS
57.6
0.32
1.8
73.56
43.4

Associated Gene:

Gene:
ARHGAP29
Ensembl Gene ID:
ENSAPLG00000008546
Chromosome:
8

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000008930
1413595 - 1469447
55853