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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_1426156_1426415_R

Intron Information:

Intron Rank:
11
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
1426156 - 1426415
Intron Length:
260

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAA|GTAAGTTTT
5'SS Class:
strong_major
3'SS Sequence:
TGTTTTTCCATAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTATAT
U12 Branch Point Sequence:
TGTCCATCAACC
Flanking Amino Acid:
RRLEEEALQKAEEANEHYKA
Intron Amino Acid Position:
408

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
89
0.92
0.8
90.7
21.1
Major BPS
79.2
0.73
1
75.3
39.4
Major PPT
80.6
0.69
0.8
76.8
32
Minor 5ss
47.8
-0.2
2.8
67.5
37.3
Minor BPS
56.6
0.19
1.8
71
39.3

Associated Gene:

Gene:
ARHGAP29
Ensembl Gene ID:
ENSAPLG00000008546
Chromosome:
8

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000008930
1413595 - 1469447
55853