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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_1426605_1426909_R

Intron Information:

Intron Rank:
10
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
1426605 - 1426909
Intron Length:
305

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTTGGTATT
5'SS Class:
major
3'SS Sequence:
TTGCATTCTGCAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TAATTAT
U12 Branch Point Sequence:
TTTCTTTGCATT
Flanking Amino Acid:
ELWQREQKKMQELEAALRKA
Intron Amino Acid Position:
345

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
69.9
0.47
1.2
75.6
39.9
Major BPS
76.9
0.67
1
66.3
40.4
Major PPT
79.3
0.66
0.9
73.5
36.7
Minor 5ss
36.8
-1.5
3.1
49.3
41.1
Minor BPS
48.7
-0
1.8
73.39
38.1

Associated Gene:

Gene:
ARHGAP29
Ensembl Gene ID:
ENSAPLG00000008546
Chromosome:
8

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000008930
1413595 - 1469447
55853