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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_1426991_1427117_R

Intron Information:

Intron Rank:
9
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
1426991 - 1427117
Intron Length:
127

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAGCTTA
5'SS Class:
strong_major
3'SS Sequence:
ATTTCCTATCTAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CTCTAAT
U12 Branch Point Sequence:
ATTTCTCTAATA
Flanking Amino Acid:
AALQSNKFVQPLLGRKNELD
Intron Amino Acid Position:
318

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
91.5
0.98
0.8
84.1
30.2
Major BPS
82.2
0.8
0.9
81.6
27
Major PPT
74.8
0.56
0.9
67.4
38.7
Minor 5ss
47.4
-0.3
2.8
64.4
47
Minor BPS
67.9
0.56
1.6
78.37
31.7

Associated Gene:

Gene:
ARHGAP29
Ensembl Gene ID:
ENSAPLG00000008546
Chromosome:
8

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000008930
1413595 - 1469447
55853