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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_14308842_14309025_R

Intron Information:

Intron Rank:
16
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
14308842 - 14309025
Intron Length:
184

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGAGCAAG
5'SS Class:
strong_major
3'SS Sequence:
GTTTTGTATGCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTGTAT
U12 Branch Point Sequence:
TAAGTTTTAGTT
Flanking Amino Acid:
NINFRKYKAPGVPRETPEEK
Intron Amino Acid Position:
654

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.3
0.83
0.9
74
38.4
Major BPS
71.5
0.53
1.4
71.7
44.6
Major PPT
79
0.65
1
73.7
40.9
Minor 5ss
33.3
-1.9
2.8
38.7
46.6
Minor BPS
49.7
0.06
1.6
65.01
40.3

Associated Gene:

Gene:
PLA2G4A
Ensembl Gene ID:
ENSAPLG00000013009
Chromosome:
8

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000013625
14306573 - 14370735
64163