About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_14309222_14311655_R

Intron Information:

Intron Rank:
15
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
14309222 - 14311655
Intron Length:
2434

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAA|GTAAGTAAG
5'SS Class:
strong_major
3'SS Sequence:
GTTATCTTTTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TATATAT
U12 Branch Point Sequence:
TTTGCTGTGAGT
Flanking Amino Acid:
RPSDSSPPFKEILLAEKWAK
Intron Amino Acid Position:
589

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86.2
0.85
0.9
80.7
33.7
Major BPS
71.4
0.53
1
67.3
39.3
Major PPT
84.3
0.77
0.8
81.2
36.4
Minor 5ss
36.8
-1.5
2.7
42.7
38.3
Minor BPS
47.3
-0.1
2.4
74.14
43.6

Associated Gene:

Gene:
PLA2G4A
Ensembl Gene ID:
ENSAPLG00000013009
Chromosome:
8

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000013625
14306573 - 14370735
64163