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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_14322855_14323199_R

Intron Information:

Intron Rank:
11
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
14322855 - 14323199
Intron Length:
345

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TGG|GTGAGTATG
5'SS Class:
strong_major
3'SS Sequence:
TTTTCCTTTTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CATTCAT
U12 Branch Point Sequence:
CATTGTTTACTT
Flanking Amino Acid:
YNENPLHFLMGVWGSAFSIL
Intron Amino Acid Position:
391

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.6
0.79
0.9
77.8
38.7
Major BPS
79.8
0.74
0.9
81.3
29.9
Major PPT
94
0.99
0.5
92.6
17.2
Minor 5ss
33.5
-1.9
2.8
34.2
41.4
Minor BPS
49.2
0.02
2
68.01
43.8

Associated Gene:

Gene:
PLA2G4A
Ensembl Gene ID:
ENSAPLG00000013009
Chromosome:
8

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000013625
14306573 - 14370735
64163