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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_1432778_1441787_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
1432778 - 1441787
Intron Length:
9010

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGGAAT
5'SS Class:
strong_major
3'SS Sequence:
TCTTTTTCATAAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTCAT
U12 Branch Point Sequence:
ATCTTTTTCATA
Flanking Amino Acid:
AAGTVIAKVKAVNFKEVNEE
Intron Amino Acid Position:
136

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
92.5
1
0.8
87.7
27.9
Major BPS
100
1.24
0.5
100
0
Major PPT
73.5
0.53
1
80.4
30.5
Minor 5ss
33.9
-1.8
3.3
47.8
47.9
Minor BPS
53.1
0.09
1.7
64.17
37.3

Associated Gene:

Gene:
ARHGAP29
Ensembl Gene ID:
ENSAPLG00000008546
Chromosome:
8

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000008930
1413595 - 1469447
55853