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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_14330008_14334195_R

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
14330008 - 14334195
Intron Length:
4188

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTAAGGATT
5'SS Class:
strong_major
3'SS Sequence:
ATTTCCGTTGCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CACTCAC
U12 Branch Point Sequence:
TTGGCACTCACA
Flanking Amino Acid:
TYIAGLSGSTWYMSTLYSHP
Intron Amino Acid Position:
232

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.8
0.84
0.9
84.3
33.3
Major BPS
64.9
0.37
1
67
29.8
Major PPT
80.1
0.68
0.9
73.7
36.2
Minor 5ss
38.3
-1.3
3.4
54.5
43.9
Minor BPS
43.6
-0.5
2.3
60.99
44.8

Associated Gene:

Gene:
PLA2G4A
Ensembl Gene ID:
ENSAPLG00000013009
Chromosome:
8

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000013625
14306573 - 14370735
64163