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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_14334333_14341458_R

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
14334333 - 14341458
Intron Length:
7126

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAT|GTAAGTTTG
5'SS Class:
strong_major
3'SS Sequence:
CTCATCTATGCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTCAT
U12 Branch Point Sequence:
TTCTTCTCATCT
Flanking Amino Acid:
NSKNLTTSRDVPVIAVLGSG
Intron Amino Acid Position:
187

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.8
0.82
1
80.8
34.4
Major BPS
94.9
1.12
0.6
93.9
14.7
Major PPT
74.8
0.56
0.9
69.3
35.8
Minor 5ss
46.2
-0.4
2.8
62.9
41.8
Minor BPS
59.5
0.38
1.8
79.56
42.7

Associated Gene:

Gene:
PLA2G4A
Ensembl Gene ID:
ENSAPLG00000013009
Chromosome:
8

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000013625
14306573 - 14370735
64163