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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_14344011_14347027_R

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
14344011 - 14347027
Intron Length:
3017

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAT|GTGAGTGGC
5'SS Class:
major
3'SS Sequence:
CTCTTTTGTGTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTAAAT
U12 Branch Point Sequence:
CCAGATTTAAAT
Flanking Amino Acid:
KKEVQLTFNNVTEMTLELSL
Intron Amino Acid Position:
127

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78
0.66
1
68.7
36.5
Major BPS
82.3
0.8
0.9
87.6
25.7
Major PPT
78.9
0.65
0.8
76.2
32.4
Minor 5ss
30
-2.3
3.2
39
39.8
Minor BPS
47.4
-0.1
1.7
58.4
44.6

Associated Gene:

Gene:
PLA2G4A
Ensembl Gene ID:
ENSAPLG00000013009
Chromosome:
8

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000013625
14306573 - 14370735
64163