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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_14347142_14349900_R

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
14347142 - 14349900
Intron Length:
2759

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAAATCAA
5'SS Class:
strong_major
3'SS Sequence:
GTATCTTTTCTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
AATTGAA
U12 Branch Point Sequence:
TGTCCTTGTATC
Flanking Amino Acid:
LDPNQENVLEVTLMDANYVM
Intron Amino Acid Position:
89

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.7
0.84
0.9
76.5
34.2
Major BPS
70.6
0.51
0.9
61.4
36.2
Major PPT
77.5
0.62
0.9
69.9
41.2
Minor 5ss
32.9
-2
3
40.7
45.5
Minor BPS
48.4
-0.1
1.7
61.51
37.6

Associated Gene:

Gene:
PLA2G4A
Ensembl Gene ID:
ENSAPLG00000013009
Chromosome:
8

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000013625
14306573 - 14370735
64163