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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_14350050_14363655_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
14350050 - 14363655
Intron Length:
13606

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TGC|GTGAGTATT
5'SS Class:
major
3'SS Sequence:
TTTTGCTGTGTAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATTTAAT
U12 Branch Point Sequence:
TTTTATTTAATG
Flanking Amino Acid:
NVTKGAIGDMLDTPDPYVEL
Intron Amino Acid Position:
39

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
69.2
0.45
1.3
77.8
38.7
Major BPS
90.7
1.01
0.7
90
19.9
Major PPT
77.6
0.62
0.9
73.7
36.9
Minor 5ss
37.2
-1.5
2.9
46.9
41.8
Minor BPS
71.8
0.55
1.5
76.08
35.8

Associated Gene:

Gene:
PLA2G4A
Ensembl Gene ID:
ENSAPLG00000013009
Chromosome:
8

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000013625
14306573 - 14370735
64163